Package: readyomics
Type: Package
Title: Ready-to-Use Omics Formatting, Analysis, and Visualization
        Pipeline
Version: 0.2.1
Authors@R: 
    c(
      person(given = "Laura", 
             family = "Martinez-Gili", 
             role = c("cre", "aut", "cph"), 
             email = "martinez.gili.laura@gmail.com")
    )
Description: Provides a flexible and streamlined pipeline for
        formatting, analyzing, and visualizing omics data, regardless
        of omics type (e.g. transcriptomics, proteomics, metabolomics).
        The package includes tools for shaping input data into
        analysis-ready structures, fitting linear or mixed-effect
        models, extracting key contrasts, and generating a rich variety
        of ready-to-use publication-quality plots. Designed for
        transparency and reproducibility across a wide range of study
        designs, with customizable components for statistical modeling.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.1.0)
Imports: dplyr, future, future.apply, ggplot2, lme4, lmerTest, methods,
        permute, rlang, stats, stringr, tidyr, utils, vegan,
        zCompositions
Suggests: ape, data.table, ggrepel, ggridges, IHW, imputeLCMD, knitr,
        phyloseq, progressr, purrr, qvalue, reformulas, rmarkdown,
        ropls, scales, testthat (>= 3.0.0)
Roxygen: list(markdown = TRUE)
BugReports: https://github.com/lmartinezgili/readyomics/issues
URL: https://lmartinezgili.github.io/readyomics/,
        https://github.com/lmartinezgili/readyomics
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake make libicu-dev
Repository: https://lmartinezgili.r-universe.dev
Date/Publication: 2026-06-24 21:52:01 UTC
RemoteUrl: https://github.com/lmartinezgili/readyomics
RemoteRef: HEAD
RemoteSha: 7b0d000af22aedc996965dfb9e1b63bfcc620eac
NeedsCompilation: no
Packaged: 2026-06-24 22:17:55 UTC; root
Author: Laura Martinez-Gili [cre, aut, cph]
Maintainer: Laura Martinez-Gili <martinez.gili.laura@gmail.com>